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Table 2 Sequence identity (in %) between the considered proteins (the binding area/entire protein)

From: Computational analysis of protein-protein interfaces involving an alpha helix: insights for terphenyl–like molecules binding

Protein/ sequence identity

Human calmodulin

Human centrin 2

Scherffelia dubia centrin

Human BCL-X2

Human E3 ubiquitin-protein ligase MDM2

Human centrin 2

54/50

    

Scherffelia dubia centrin

56/55

90/74

   

Human BCL-X2

5/7

5/5

5/8

  

Human E3 ubiquitin-protein ligase MDM2

5/4

5/10

7/6

9/5

 

Rabbit cardiac troponin C

57/51

57/34

37/32

5/9

5/19

  1. The binding area was defined here as all residues of the protein interacting with the helical peptide.
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BMC Pharmacology and Toxicology

ISSN: 2050-6511

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